It's quite complicated to understand the proper gating effects for gating out a load. I explain much of this in Chapter 4 or my new book (it takes about 20 pages to fully explain gating and gating compensation).
The effects that must be included are:
Compensating for lost energy to to gating out connectors preceeding the DUT
Compensating for gate re-normalization due to non-symmetric gate responses
Compensating for gate shape effects
In practice, the last two effects occur only in the last 10% of the frequency response, if low-pass mode is used.
The gate start should be set at least one gate width before the onset of the DUT time-domain response. The gate stop should be set to center the DUT response in the gate. Wider gate widths generate smaller edge effects so make the gate as wide as practial while keeping the response centered on the DUT.
References:
http://www.wiley.com/WileyCDA/WileyTitle/productCd-1119979552.html